PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01251g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 228aa    MW: 26033.5 Da    PI: 4.5229
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01251g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-151469146
                              TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqk 46
                              rg+W++ Ed++l++++ ++G +           tW+ Ia++++ gRt++++k+ w++
  Peaxi162Scf01251g00013.1 14 RGPWSKKEDDILINYIDKHGHPnwrqlpklaafTWSVIAAKLP-GRTDNEIKNIWHT 69
                              89*****************************************.*********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-21580IPR009057Homeodomain-like
PROSITE profilePS5129416.826975IPR017930Myb domain
SuperFamilySSF466893.16E-13979IPR009057Homeodomain-like
SMARTSM007173.9E-91373IPR001005SANT/Myb domain
PfamPF002491.9E-121469IPR001005SANT/Myb domain
CDDcd001671.03E-81671No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRTPCCEKL GLNRGPWSKK EDDILINYID KHGHPNWRQL PKLAAFTWSV IAAKLPGRTD  60
NEIKNIWHTR LKKKMNQSQI QEKTPDIREQ PSETSKSEDS TNIQENTEIS SPKPNSNNQH  120
EPSSSLRSSS SITSSSEGSC SNTTTTSSHI DESRDQMNLE NLLEVDDNFW SEVLWATPAD  180
DSKDNNLDFS LSSVEKNYEL DSSLNDNWLW DDLFSRANEF LLEFPELV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770485.17e-85PREDICTED: myb-related protein Myb4-like
TrEMBLQ1T7B34e-75Q1T7B3_TOBAC; Methyl jasmonate induced MYB-related transcription factor
STRINGPGSC0003DMT4000516828e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1710323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-34myb domain protein 13